# Table of contents

- [**Citation**](https://learninghub.primer-e.com/link/986)
- [**Summary**](https://learninghub.primer-e.com/link/1088)
- [**1. Install & activate PRIMER 8**](https://learninghub.primer-e.com/books/get-started-with-primer-8/chapter/1-install-activate-primer-8)
    - [Overview](https://learninghub.primer-e.com/link/1106)
- [**2. Getting data in to PRIMER**](https://learninghub.primer-e.com/books/get-started-with-primer-8/chapter/2-getting-data-in-to-primer)
    - [Getting example data](https://learninghub.primer-e.com/link/1115)
    - [Opening example data](https://learninghub.primer-e.com/link/994)
    - [Importing data from Excel](https://learninghub.primer-e.com/link/995)
    - [Post-import data checks](https://learninghub.primer-e.com/link/996)
    - [Save your data & workspace](https://learninghub.primer-e.com/link/997)
- [**3. Example analysis pathway (CLUSTER, MDS, ANOSIM)**](https://learninghub.primer-e.com/books/get-started-with-primer-8/chapter/3-example-analysis-pathway-cluster-mds-anosim)
    - [An analysis of biotic data](https://learninghub.primer-e.com/link/998)
    - [Step 1: Transformation](https://learninghub.primer-e.com/link/999)
    - [Step 2: Resemblance](https://learninghub.primer-e.com/link/1000)
    - [Step 3: Cluster](https://learninghub.primer-e.com/link/1001)
    - [Step 4: Ordination](https://learninghub.primer-e.com/link/1002)
    - [Step 5: ANOSIM test](https://learninghub.primer-e.com/link/1003)
    - [Summary of the pathway](https://learninghub.primer-e.com/link/1004)
- [**4. Some wizards**](https://learninghub.primer-e.com/books/get-started-with-primer-8/chapter/4-some-wizards)
    - [Basic multivariate analysis](https://learninghub.primer-e.com/link/1005)
    - [Matrix display](https://learninghub.primer-e.com/link/1006)
- [**5. Run a PERMANOVA**](https://learninghub.primer-e.com/books/get-started-with-primer-8/chapter/5-run-a-permanova)
    - [Overview](https://learninghub.primer-e.com/link/1007)
    - [A three-factor hierarchical design](https://learninghub.primer-e.com/link/1008)
    - [Steps in a PERMANOVA analysis](https://learninghub.primer-e.com/link/1009)
    - [Step 1: Data selection](https://learninghub.primer-e.com/link/1010)
    - [Step 2: Jaccard resemblance](https://learninghub.primer-e.com/link/1011)
    - [Step 3: Specify the design](https://learninghub.primer-e.com/link/1012)
    - [Step 4: Run PERMANOVA](https://learninghub.primer-e.com/link/1013)
    - [Step 4 (continued): Key additional destails about PERMANOVA in PRIMER](https://learninghub.primer-e.com/link/1014)
    - [Step 5: Ordination of centroids](https://learninghub.primer-e.com/link/1015)
    - [Summary of the PERMANOVA analysis](https://learninghub.primer-e.com/link/1016)
- [**6. Help & additional resources**](https://learninghub.primer-e.com/books/get-started-with-primer-8/chapter/6-help-additional-resources)
    - [Help & support](https://learninghub.primer-e.com/link/1119)
    - [Further reading](https://learninghub.primer-e.com/link/1099)
- [**References**](https://learninghub.primer-e.com/link/1017)