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Introduction and overview
PERMANOVA+ for PRIMER: Guide to Softwar...
Chapter 1: Permutational ANOVA and MANOVA (PERMANOVA)
PERMANOVA+ for PRIMER: Guide to Softwar...
Key references: Method: Anderson (2001a), McArdle & Anderson (2001) Permutation techniques: Anderson (2001b), Anderson & ter Braak (2003)
Chapter 2: Tests of homogeneity of dispersions (PERMDISP)
PERMANOVA+ for PRIMER: Guide to Softwar...
Key reference Method: Anderson (2006)
Chapter 3: Principal coordinates analysis (PCO)
PERMANOVA+ for PRIMER: Guide to Softwar...
Key references Method: Torgerson (1958), Gower (1966)
Chapter 4: Distance-based linear models (DISTLM) and distance-based redundancy analysis (dbRDA)
PERMANOVA+ for PRIMER: Guide to Softwar...
Key references Method: Legendre & Anderson (1999), McArdle & Anderson (2001) Permutation methods: Freedman & Lane (1983), Anderson & Legendre (1999), Anderson & Robinson (2001), Anderson (2001b)
Chapter 5: Canonical analysis of principal coordinates (CAP)
PERMANOVA+ for PRIMER: Guide to Softwar...
Key references Method: Anderson & Robinson (2003), Anderson & Willis (2003)
Appendices
PERMANOVA+ for PRIMER: Guide to Softwar...
Overview
PRIMER v7: User Manual / Tutorial
An overview of the software.
A brief tour through the operation of PRIMER v7
PRIMER v7: User Manual / Tutorial
A brief tour through the operation of PRIMER v7
0. Trial version, Help system, Manuals, Updates, Install and Uninstall (Help)
PRIMER v7: User Manual / Tutorial
1. Opening, editing and saving data (File, Edit)
PRIMER v7: User Manual / Tutorial
2. Factors (and Indicators), identifying sample (and species) groups
PRIMER v7: User Manual / Tutorial
3. Highlighting and selection (Select)
PRIMER v7: User Manual / Tutorial
4. Pre-treatment options
PRIMER v7: User Manual / Tutorial
5. Resemblance: similarities, dissimilarities and distances
PRIMER v7: User Manual / Tutorial
6. Clustering methods (CLUSTER, SIMPROF, UNCTREE, kRCLUSTER)
PRIMER v7: User Manual / Tutorial
7. Managing the workspace and plotting (Window, File, View, Multi Plot, Plots)
PRIMER v7: User Manual / Tutorial
8. Multi-dimensional scaling (Non-metric nMDS, Metric mMDS, Combined MDS)
PRIMER v7: User Manual / Tutorial
9. Analysis of Similarity tests (unordered and ordered ANOSIM)
PRIMER v7: User Manual / Tutorial
10. Wizards and species analyses (Basic MVA, Coherence plots, Matrix display, SIMPER)
PRIMER v7: User Manual / Tutorial