Recently Updated Pages
Renaming or deleting items in a workspace; Undo in the Explorer tree to reinstate or re-order
Met briefly in Section 1 and again above, renaming or deleting windows in the Explorer tree is an...
Rolling up branches of the tree
In the display of the Explorer tree at the beginning of this section, the SIMPROF1 window was...
Understanding the Explorer tree
Understanding the Explorer tree, however, is the key to managing your work pattern in PRIMER. In ...
Closing, redisplaying & tiling windows; Minimising windows; View menu
From the Explorer tree for the above illustration, you can see that workspace has been saved as B...
Forward and backward propagation
The Explorer tree not only makes it easy to navigate the sequence of steps taken in an analysis b...
Flat-form clustering
Another new introduction in PRIMER 7 is a form of non-hierarchical (flat) clustering, the analogu...
Special menu for divisive trees
PRIMER 7 also provides a choice of representations of the tree structure, using either the A% or ...
Text pane in tree plots; A% and B% y-axis scales
Note how each node is now lettered so that information about the R value for that split can be di...
Binary divisive clustering
Two new clustering methods are introduced towards the end of Chapter 3 in CiMC, the first still a...
Limiting font size
Note that the plots above required a certain amount of juxtaposition of different font sizes for ...
Single and complete linkage
Now re-run Analyse>Cluster>CLUSTER>(Cluster mode•Single linkage), creating the SIMPROF factor Sin...
Linkage by flexible beta method
There are four possible Cluster mode choices within the Analyse>Cluster>CLUSTER dialog box, disti...
Histograms of null distributions
As in all permutation tests in PRIMER v7 (e.g. in ANOSIM, RELATE, BEST etc.), a further output fr...
SIMPROF Types (1-4)
The first dialog box from running Analyse>SIMPROF, however, is of a new option to PRIMER 7, a cho...
SIMPROF direct run
SIMPROF can be run directly using Analyse>SIMPROF, rather than as part of another analysis such a...
CLUSTER results window
In addition to the dendrogram plot itself, Analyse>CLUSTER (like all analysis routines) produces ...
(Bristol Channel zooplankton)
Densities from 24 species of zooplankton at 57 sites in the Bristol Channel and Severn Estuary, c...
SIMPROF method
The similarity profile test (SIMPROF), Clarke KR, Somerfield PJ, Gorley RN 2008, J Exp Mar Biol E...
Zooming dendrograms
Zooming is invoked by Graph>Zoom In or Zoom Out from the main menu, or by clicking on the Zoom in...
Rotating & condensing dendrograms
The order of samples on the (by default) x axis of a dendrogram is to a large extent arbitrary, s...