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Diagnostic tools for MDS plots
In addition to the ability in a previous PRIMER version to Graph>Special>Overlays>(✓Overlay clust...
Rationale for nMDS & mMDS
Chapter 5 of the CiMC methods manual describes the operation and rationale of multi-dimensional s...
Workspace planning
To conclude this section, it is worth remarking that care taken in structuring workspaces will of...
Plots menu
PRIMER 7 has a new Plots main menu, available when the active window is a data matrix. This bring...
User creation/ manipulation of multi-plots
In addition to automatic generation by certain routines, multi-plots can be created and populated...
Automatic creation of multi-plots
The concept of a Multi-plot is a new feature in PRIMER 7. This construction has already been met ...
Printing results and graphs
Direct printing from PRIMER is also possible for analysis endpoints such as results windows, all ...
Adding notes
It is not permitted to edit directly the information in a results window. This tells you what ope...
Saving graph values; Saving results
Certain graphs, such as MDS ordinations (Section 8) or Cluster dendrograms, can be validly rotate...
Vector vs. pixel plots
Closing the second PRIMER desktop and returning to the original Bristol Channel ws workspace, not...
Saving plots
The name of a window can also be changed as part of the process of saving it, as a file external ...
Renaming or deleting items in a workspace; Undo in the Explorer tree to reinstate or re-order
Met briefly in Section 1 and again above, renaming or deleting windows in the Explorer tree is an...
Rolling up branches of the tree
In the display of the Explorer tree at the beginning of this section, the SIMPROF1 window was...
Understanding the Explorer tree
Understanding the Explorer tree, however, is the key to managing your work pattern in PRIMER. In ...
Closing, redisplaying & tiling windows; Minimising windows; View menu
From the Explorer tree for the above illustration, you can see that workspace has been saved as B...
Forward and backward propagation
The Explorer tree not only makes it easy to navigate the sequence of steps taken in an analysis b...
Flat-form clustering
Another new introduction in PRIMER 7 is a form of non-hierarchical (flat) clustering, the analogu...
Special menu for divisive trees
PRIMER 7 also provides a choice of representations of the tree structure, using either the A% or ...
Text pane in tree plots; A% and B% y-axis scales
Note how each node is now lettered so that information about the R value for that split can be di...
Binary divisive clustering
Two new clustering methods are introduced towards the end of Chapter 3 in CiMC, the first still a...