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(Ekofisk oilfield macrofauna)
A good example of how ordering of species in a shade plot can aid interpretation is seen for macr...
Seriate operation; Seriate a shade plot dendrogram
Slightly more detail on how the seriate options are constructed, on both samples and species axes...
Shade Plot options in Matrix display
The Graph options taken automatically by Matrix Display to produce the final shade plot output ar...
Install and activate PRIMER
Install the software Important note: You will require administrator permissions on your user acco...
Branches created in the Explorer tree
The first branch takes the square root of the full matrix Frierfjord macrofauna counts, giving Da...
Transforms in Matrix display
The next dialog box on Matrix display is (Transformation: ), with default of Square roo...
Reducing the species set
Of the 110 species, many occur only in one or two replicates, often as singleton individuals, so ...
(Frierfjord macrofauna)
A data set not met elsewhere in this manual but which is used a great deal in CiMC, e.g. to start...
Wizard for Matrix display
Another significant addition to the descriptive tools now available in PRIMER 7 is that of Plots>...
Basic MVA for environ-mental data
Finally, try running Analyse>Basic multivariate analysis on this environmental data matrix, Fal e...
Basic MVA for a priori unstructured biotic data
In the Fal estuary study, where there are environmental data matching each of the 27 sites, it is...
Basic MVA for structured data (Fal nematodes)
The benthic faunal study in the Fal estuary, Cornwall UK, was seen in Section 4. Sediment samples...
Basic multivariate analysis wizard
The three Wizards menu items carry out sequences of routines, all of which can be run separately ...
2-way nested ANOSIM (Calafuria macroalgae)
Subtidal rocky reefs, at ca 10m depth, at the Calafuria station in the Ligurian Sea, N Italy, wer...
Other 1-way ANOSIM options
Checking the (✓Pairwise tests to worksheet) box has also sent the above R values to a worksheet i...
3-way crossed /nested design (Tees Bay macrofauna)
The two other possible 3-way designs can be written C(A$\times$B) and B$\times$C(A). The first is...
3-way fully nested design (NZ holdfast fauna)
The 3-way fully nested design has factor C at the lowest level, nested in B at the mid level, whi...
3-way crossed ANOSIM (King Wrasse diets)
A dietary study of W Australian fish concerns composition by the volume of taxa (21 broad dietary...
ANOSIM for 2-way crossed design with no replication (Exe study)
The 2-way crossed ANOSIM for an unordered factor, and with each combination of the two factors on...
2-way crossed ordered test
The test for an ordered factor (A) in the 2-way crossed design parallels the construction seen ea...