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A2 References

PERMANOVA+ for PRIMER: Guide to Softwar... Appendices

Akaike (1973) Akaike H. 1973. ‘Information theory as an extension of the maximum l...

Updated 1 month ago by Arden

Transforming (overall)

PRIMER v7: User Manual / Tutorial 4. Pre-treatment options

Transformation is usually applied to all the entries in an assemblage matrix of counts, biomass, ...

Updated 1 month ago by Abby Miller

Standardising species

PRIMER v7: User Manual / Tutorial 4. Pre-treatment options

Pre-treatment>Standardise can also be used to standardise the matrix on the variables axis, e.g. ...

Updated 1 month ago by Abby Miller

Stats to worksheet

PRIMER v7: User Manual / Tutorial 4. Pre-treatment options

Several of the routines in PRIMER 7 also incorporate a check box for sending summary statistics u...

Updated 1 month ago by Abby Miller

Selection in resemblance matrices

PRIMER v7: User Manual / Tutorial 3. Highlighting and selection (Select)

Looking ahead to Section 5, when the active window is a (triangular) resemblance matrix, selectio...

Updated 1 month ago by Abby Miller

Selecting by ‘most important’

PRIMER v7: User Manual / Tutorial 3. Highlighting and selection (Select)

There are, however, three other selection methods under Select>Variables that are specific to sel...

Updated 1 month ago by Abby Miller

Selecting variables

PRIMER v7: User Manual / Tutorial 3. Highlighting and selection (Select)

Any of the options for selecting samples are also available for selecting variables, e.g. selecti...

Updated 1 month ago by Abby Miller

Selecting by number and non-missing

PRIMER v7: User Manual / Tutorial 3. Highlighting and selection (Select)

It may sometimes be easier to use the sample numbers, here Select>Samples>•Sample numbers> 1,2,5,...

Updated 1 month ago by Abby Miller

Multiple selections

PRIMER v7: User Manual / Tutorial 3. Highlighting and selection (Select)

It is important to note the effect of this second selection on WA fish diets %vol; it produces a ...

Updated 1 month ago by Abby Miller

Selecting by factor levels

PRIMER v7: User Manual / Tutorial 3. Highlighting and selection (Select)

The highlighting route to selection can be bypassed altogether using the other options on the Sel...

Updated 1 month ago by Abby Miller

Selecting & deselecting highlights

PRIMER v7: User Manual / Tutorial 3. Highlighting and selection (Select)

When all except columns A9, B3 and B4 are highlighted, take Select>Highlighted. Alternatively, ri...

Updated 1 month ago by Abby Miller

Summary Statistics

PRIMER v7: User Manual / Tutorial 3. Highlighting and selection (Select)

File>Open>Filename: WA fish diets %vol, and examine the factors sheet with Edit>Factors. The samp...

Updated 1 month ago by Abby Miller

Highlight and select

PRIMER v7: User Manual / Tutorial 3. Highlighting and selection (Select)

There are many cases in which analyses of different subsets of the samples or species are require...

Updated 1 month ago by Abby Miller

Variable information (aggregation files)

PRIMER v7: User Manual / Tutorial 2. Factors (and Indicators), identifyin...

However, the full range of hierarchical indicators represented by a Linnaean classification (whi...

Updated 1 month ago by Abby Miller

Indicators in selection

PRIMER v7: User Manual / Tutorial 2. Factors (and Indicators), identifyin...

Selection by indicator levels is demonstrated by Select>Variables>(•Indicator levels)>(Indicator ...

Updated 1 month ago by Abby Miller

Creating indicators on variables

PRIMER v7: User Manual / Tutorial 2. Factors (and Indicators), identifyin...

Indicator is the term PRIMER uses for a factor defined on the variables not on the samples. It is...

Updated 1 month ago by Abby Miller

Factors in *.xls(x) or *.txt files

PRIMER v7: User Manual / Tutorial 2. Factors (and Indicators), identifyin...

As noted in Section 1, factors can be created as part of the Excel or text files which are the us...

Updated 1 month ago by Abby Miller

Factor keys

PRIMER v7: User Manual / Tutorial 2. Factors (and Indicators), identifyin...

A further button on the Edit>Factors dialog box is Key, which you could examine with the factors ...

Updated 1 month ago by Abby Miller

Combining factors (e.g. to average)

PRIMER v7: User Manual / Tutorial 2. Factors (and Indicators), identifyin...

With the Tasmania nematodes sheet active, open the Factors dialog with Edit>Factors. Combining fa...

Updated 1 month ago by Abby Miller

Multiple sessions and recent workspaces

PRIMER v7: User Manual / Tutorial 2. Factors (and Indicators), identifyin...

As a further example of Fill>Value to quickly set up a factor of group levels you might like to r...

Updated 1 month ago by Abby Miller