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(W Australia fish diets)
Dietary data on the gut contents of 7 marine fish species found in nearshore waters of the lower ...
Label matching
Alternatively, the same endpoint could have been achieved by Adding three new blank factors to th...
A three-factor hierarchical design
We will run PERMANOVA on an example dataset consisting of assemblages of molluscs collected from ...
4.2 Should I use PRIMER or R? (in short)
Use Both! The take-home message here is: use both! Neither replaces the other. They are good at d...
3.6 Summarising the comparison
In summary: I recommend using PERMANOVA in PRIMER. I do not recommend using adonis2 in R. Except...
2.1 R has a lot going for it
R is a general tool (). It is a statistical programming language (). There are a lot of people us...
2.3 Pros and Cons of using R
To re-cap and summarise, below is a table outlining the primary pros and cons of using R, as I se...
1.3 Pros and Cons of using PRIMER
To re-cap and summarise, below is a table outlining the primary pros and cons of using PRIMER, as...
Matrix display
The Matrix display wizard produces a shade plot of a multivariate data matrix, with a useful orde...
1. General information
We're delighted that you've chosen to use PRIMER software. If you run in to any difficulties, we'...
Editing labels
Take File>Open>(Filename: Tasmania copepods v4.pm1)>Type•Species-sample to input this (archival) ...
Text-format input files
The Tasmania meiofauna directory also contains three different text format versions of the copepo...
Opening the same file twice
PRIMER 7 will allow the same file to be opened into the workspace more than once, since the respo...
Overview
If you have purchased the PERMANOVA+ add-on, then you will have an additional menu item that allo...
Summary of the PERMANOVA analysis
A summary of the essential commands associated with performing this PERMANOVA analysis of the hol...
Summary of the pathway
A summary of the essential routines in PRIMER that were used to produce the 5-step analysis pathw...
Step 4 (continued): Key additional details about PERMANOVA in PRIMER
Following the PERMANOVA table of results, a suite of key additional details regarding the analysi...
3.1 Compare example output
PERMANOVA vs 'adonis2' It is instructive to look at a particular example. Let's compare the resul...
5. References
Anderson (2001a) Anderson, M.J. (2001a) A new method for non-parametric multivaria...
4.1 Final cautionary notes
The purpose of this exposé has been to highlight some important pros and cons associated with usi...