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Undo data sheet edits

PRIMER v7: User Manual / Tutorial 1. Opening, editing and saving data (Fi...

Occasionally, cell values are accidentally deleted or rows/columns added in unintended places but...

Updated 1 year ago by Arden

3.3 How does PERMANOVA do it?

Should I use PRIMER or R? 3. PERMANOVA vs adonis2 in R

Following the PERMANOVA table of results, a suite of key additional details regarding the analysi...

Updated 1 year ago by Marti

Entering data directly

PRIMER v7: User Manual / Tutorial 1. Opening, editing and saving data (Fi...

Most users will already have their data stored in rectangular form in some other software, e.g. a...

Updated 1 year ago by Arden

Compatibility of files

PRIMER v7: User Manual / Tutorial 1. Opening, editing and saving data (Fi...

PRIMER 7 is fully forward-compatible from v6, and can input PRIMER 6, 5 and 4 data (*.pri and *.p...

Updated 1 year ago by Arden

1.4 Sums of squares from a distance matrix

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 1: Permutational ANOVA and MANO...

We can now consider the structure of a distance/dissimilarity matrix and how sums of squares for ...

Updated 1 year ago by Arden

Citation

Should I use PRIMER or R?

Anderson, M.J. (2024) Should I use PRIMER or R? PRIMER-e Learning Hub. PRIMER-e, Auckland, New Z...

Updated 1 year ago by Marti

Example data

PRIMER v7: User Manual / Tutorial 0. Trial version, Help system, Manuals,...

Help>Get Examples V7 will take you to the data sets used throughout this manual [and Help>Get Exa...

Updated 1 year ago by Arden

Help system & manuals

PRIMER v7: User Manual / Tutorial 0. Trial version, Help system, Manuals,...

The Help main menu has the entries shown, starting with View Help, the HTML Help system: This li...

Updated 1 year ago by Arden

8. References

A Quick Guide to PRIMER

Anderson (2001a) Anderson, M.J. (2001a) A new method for non-parametric multivaria...

Updated 1 year ago by Marti

Step 4: Run PERMANOVA

A Quick Guide to PRIMER 7. Run a PERMANOVA

Once the design file is created, we are ready to go ahead with the PERMANOVA analysis. Click on ...

Updated 1 year ago by Marti

Step 5: Ordination of centroids

A Quick Guide to PRIMER 7. Run a PERMANOVA

Having seen the results of a PERMANOVA analysis, it is natural to wish to see a visualisation of ...

Updated 1 year ago by Marti

Steps in a PERMANOVA analysis

A Quick Guide to PRIMER 7. Run a PERMANOVA

The two essential steps required to run a PERMANOVA analysis in PRIMER are always: first, speci...

Updated 1 year ago by Marti

Step 3: Specify the design

A Quick Guide to PRIMER 7. Run a PERMANOVA

PERMANOVA requires a design file to run. You can see the Factors associated with the holdfast dat...

Updated 1 year ago by Marti

Step 2: Jaccard resemblance

A Quick Guide to PRIMER 7. Run a PERMANOVA

Calculate the Jaccard resemblance From the 'Molluscs' data sheet, click Analyse > Resemblance.......

Updated 1 year ago by Marti

Step 1: Transformation

A Quick Guide to PRIMER 5. Example analysis pathway (CLUSTER, M...

Perform the transformation There are a range of possible transformations one might use in a pre-t...

Updated 1 year ago by Marti

Step 3: Cluster

A Quick Guide to PRIMER 5. Example analysis pathway (CLUSTER, M...

Now that we have a resemblance matrix, we can proceed with a cluster analysis of the data. The pu...

Updated 1 year ago by Marti

Download manuals

A Quick Guide to PRIMER 3. Download manuals and examples

The following manuals can be downloaded from within the software itself: Getting Started...: Cl...

Updated 1 year ago by Marti

1.5 The pseudo-F statistic

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 1: Permutational ANOVA and MANO...

Once the partitioning has been done we are ready to calculate a test statistic associated with th...

Updated 1 year ago by Marti

1.2 Univariate techniques

Change in Marine Communities Chapter 1: A framework for studying cha...

For diversity indices and other single-variable extractions from the data matrix, standard statis...

Updated 1 year ago by Marti

0.2 Acknowledgements

Change in Marine Communities Introduction and acknowledgements

Any initiative spanning quite as long a period as the PRIMER software represents (the first recog...

Updated 1 year ago by Marti