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10.2 Examples

Change in Marine Communities Chapter 10: Species aggregation to high...

Multivariate examples   Nutrient-enrichment experiment In the soft-bottom mesocosms at Solbergstr...

Updated 2 years ago by Arden

9.4 Recommendations

Change in Marine Communities Chapter 9: Transformations and dispers...

The transformation sequence in a multivariate analysis, corresponding to a progressive downweight...

Updated 2 years ago by Arden

9.3 Multivariate case

Change in Marine Communities Chapter 9: Transformations and dispers...

There being no necessity to transform to attain distributional properties, transformations play a...

Updated 2 years ago by Arden

9.1 Introduction

Change in Marine Communities Chapter 9: Transformations and dispers...

There are two distinct roles for transformations in community analyses: a) to validate statistica...

Updated 2 years ago by Arden

7.9 Example: Tasmanian meiofauna

Change in Marine Communities Chapter 7: Species analyses

Another clear generalisation is to a 2-way rather than 1-way layout, illustrated by the 16 meiofa...

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7.7 Example: Ekofisk oil-field macrofauna

Change in Marine Communities Chapter 7: Species analyses

The 39 sites sampled for benthic infauna at different distances from an oil-field in the N Sea we...

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7.4 Shade plots

Change in Marine Communities Chapter 7: Species analyses

An alternative to line plots, and a technique that can often be even more useful, in terms of the...

Updated 2 years ago by Arden

5.1 General description

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 5: Canonical analysis of princi...

Key references Method: ,   CAP is a routine for performing canonical analysis of principal co...

Updated 3 years ago by Arden

5.9 Caveats on using CAP (Tikus Island corals)

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 5: Canonical analysis of princi...

When using the CAP routine, it should come as no surprise that the hypothesis (usually) is eviden...

Updated 3 years ago by Arden

5.2 Rationale (Flea-beetles)

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 5: Canonical analysis of princi...

In some cases, we may know that there are differences among some pre-defined groups (for example,...

Updated 3 years ago by Arden

4.1 General description

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 4: Distance-based linear models...

Key references Method:, Permutation methods: , , ,   DISTLM is a routine for analysing and ...

Updated 3 years ago by Arden

4.9 Cautionary notes

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 4: Distance-based linear models...

Before proceeding, a few cautionary notes are appropriate with respect to building models. First,...

Updated 3 years ago by Arden

3.1 General description

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 3: Principal coordinates analys...

Key references Method: ,   PCO is a routine for performing principal coordinates analysis () ...

Updated 3 years ago by Arden

2.1 General description

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 2: Tests of homogeneity of disp...

Key reference Method:   PERMDISP is a routine for testing the homogeneity of multivariate dis...

Updated 3 years ago by Arden

1.1 General description

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 1: Permutational ANOVA and MANO...

Key references Method: , Permutation techniques: ,   PERMANOVA is a routine for testing the...

Updated 3 years ago by Arden

2.5 $P$-values by permutation

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 2: Tests of homogeneity of disp...

The other hurdle that must be cleared is to recognise that, in line with the philosophy of all of...

Updated 3 years ago by Arden

2.3 Multivariate Levene’s test (Bumpus’ sparrows)

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 2: Tests of homogeneity of disp...

proposed doing an analysis of variance (ANOVA) on the absolute values of deviations of observati...

Updated 3 years ago by Arden

1.24 Exchangeable units

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 1: Permutational ANOVA and MANO...

The denominator mean square of the pseudo-F ratio for any particular term in the analysis is impo...

Updated 3 years ago by Arden

1.15 Interpreting interactions

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 1: Permutational ANOVA and MANO...

What do we mean by an “interaction” between two factors in multivariate space? Recall that for a ...

Updated 3 years ago by Arden

1.9 Creating a design file

PERMANOVA+ for PRIMER: Guide to Softwar... Chapter 1: Permutational ANOVA and MANO...

We shall formally test the hypothesis of no differences in community structure among the four gro...

Updated 3 years ago by Arden