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6.16 Example: NZ kelp holdfast macrofauna

Change in Marine Communities Chapter 6: Testing for differences betw...

We now consider the fully nested design, C(B(A)). In north-eastern New Zealand, examined assembl...

Updated 10 months ago by Abby Miller

6.15 Example: King Wrasse fish diets, WA

Change in Marine Communities Chapter 6: Testing for differences betw...

We begin the 3-factor examples with a fully crossed design A$\times$B$\times$C of the composition...

Updated 10 months ago by Abby Miller

6.14 Three-way ANOSIM designs

Change in Marine Communities Chapter 6: Testing for differences betw...

Table 6.4 details all viable combinations of 3 factors, A, B, C, in crossed/nested form, ordered/...

Updated 10 months ago by Abby Miller

6.12 Two-way ordered ANOSIM designs

Change in Marine Communities Chapter 6: Testing for differences betw...

Under the non-parametric framework adopted in this manual (and in the PRIMER package) three forms...

Updated 10 months ago by Abby Miller

6.11 Example: Ekofisk oil-field macrofauna

Change in Marine Communities Chapter 6: Testing for differences betw...

studied the soft-sediment macrobenthos at 39 sites at different distances (100m to 8km) and diff...

Updated 10 months ago by Abby Miller

6.9 Example: Exe nematodes (no replication and missing data)

Change in Marine Communities Chapter 6: Testing for differences betw...

A final example demonstrates a positive outcome to such a test, in a common case of a 2-way layou...

Updated 10 months ago by Abby Miller

6.7 Example: Eaglehawk Neck meiofauna (two-way crossed case)

Change in Marine Communities Chapter 6: Testing for differences betw...

An example of a two-way crossed design is given in and is introduced more fully here in Chapter ...

Updated 10 months ago by Abby Miller

6.6 Example: Clyde nematodes (2-way nested case)

Change in Marine Communities Chapter 6: Testing for differences betw...

analysed meiobenthic communities from three putatively polluted (P) areas of the Firth of Clyde ...

Updated 10 months ago by Abby Miller

6.3 Example: Frierfjord macrofauna

Change in Marine Communities Chapter 6: Testing for differences betw...

The rank similarities underlying Fig. 6.3 are shown in Table 6.2 (note that these are the similar...

Updated 10 months ago by Abby Miller

6.1 Univariate tests and multivariate tests

Change in Marine Communities Chapter 6: Testing for differences betw...

Many community data sets possess some a priori defined structure within the set of samples, for e...

Updated 10 months ago by Abby Miller

BVStep starting and stopping options

PRIMER v7: User Manual / Tutorial 14. Further matching of multivariate pa...

On B-C on 4rt, Analyse>BEST>(Method•BVSTEP) & (Worksheet: 4rt data), taking the defaults for all ...

Updated 10 months ago by Arden

5.9 Example: Okura estuary macrofauna

Change in Marine Communities Chapter 5: Ordination of samples by mul...

describe macrofauna samples from the Okura estuary {O}, on the northern fringes of urban Aucklan...

Updated 10 months ago by Marti

5.8 Further nMDS/mMDS developments

Change in Marine Communities Chapter 5: Ordination of samples by mul...

Higher dimensional solutions MDS solutions can be sought in higher dimensions and we noted previo...

Updated 10 months ago by Marti

5.7 MDS strengths and weaknesses

Change in Marine Communities Chapter 5: Ordination of samples by mul...

MDS strengths MDS is simple in concept. The numerical algorithm is undeniably complex, but it ...

Updated 10 months ago by Marti

5.4 EXAMPLE: Dosing experiment, Solbergstrand

Change in Marine Communities Chapter 5: Ordination of samples by mul...

The nematode abundance data from the dosing experiment {D} at the GEEP Oslo Workshop was previous...

Updated 10 months ago by Marti

5.2 Non-metric multidimensional scaling (MDS)

Change in Marine Communities Chapter 5: Ordination of samples by mul...

The method of non-metric MDS was introduced by and , for application to problems in psychology; ...

Updated 10 months ago by Marti

4.2 Principal components analysis

Change in Marine Communities Chapter 4: Ordination of samples by pri...

The starting point for PCA is the original data matrix rather than a derived similarity matrix (t...

Updated 10 months ago by Marti

4.1 Ordinations

Change in Marine Communities Chapter 4: Ordination of samples by pri...

An ordination is a map of the samples, usually in two or three dimensions, in which the placement...

Updated 10 months ago by Marti

3.6 Binary divisive clustering

Change in Marine Communities Chapter 3: Clustering methods

All discussion so far has been in terms of hierarchical agglomerative clustering, in which sample...

Updated 10 months ago by Marti

3.5 Similarity profiles (SIMPROF)

Change in Marine Communities Chapter 3: Clustering methods

Given the form of the dendrogram in Fig. 3.3, with high similarities in apparently tightly define...

Updated 10 months ago by Marti