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Tree menu; Check on datasheets & resemblances; Undefined resemblances

PRIMER v7: User Manual / Tutorial 11. General data manipulation (Tools, f...

The other Tools menu item for aggregation sheets is distinctive to this case, namely Tools>Tree; ...

Updated 4 hours ago by Abby Miller

Check on aggregation files

PRIMER v7: User Manual / Tutorial 11. General data manipulation (Tools, f...

Use the open aggregation file, Groundfish taxonomy, to show the smaller set of Tools items (Tree,...

Updated 4 hours ago by Abby Miller

Aggregation

PRIMER v7: User Manual / Tutorial 11. General data manipulation (Tools, f...

So far we have only seen variable information sheets, containing taxonomic (or other) hierarchies...

Updated 4 hours ago by Abby Miller

Average and Sum on data matrices; Average on resemblance matrices

PRIMER v7: User Manual / Tutorial 11. General data manipulation (Tools, f...

Tools>Average and Sum operate in the same way on data sheets. For example, when (Samples• Average...

Updated 4 hours ago by Abby Miller

Tools vs. Edit menu

PRIMER v7: User Manual / Tutorial 11. General data manipulation (Tools, f...

Both the Edit (see Section 1) and Tools main menus carry out ‘housekeeping’ manipulations on a da...

Updated 4 hours ago by Abby Miller

SIMPER on (squared) Euclidean (N Sea biomarkers)

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

Save and close Tasmania ws and, as a last example, open the recently closed N Sea ws workspace. O...

Updated 5 hours ago by Abby Miller

SIMPER on 2-way crossed layout (Tasmania nematodes)

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

A natural extension to the 1-way SIMPER is to the 2-way crossed design, so re-open the Tasmania w...

Updated 5 hours ago by Abby Miller

Species typifying a group

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

Earlier in the results window, tables are given of the contributions of each species to the Bray-...

Updated 5 hours ago by Abby Miller

Species dis-criminating two groups (Bristol Ch. zooplankton)

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

Re-open the Bristol Channel ws workspace from C:\Examples v7\BC zooplankton, for which the shade ...

Updated 5 hours ago by Abby Miller

SIMPER (Similarity Percentages)

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

Shade plots are an excellently succinct way of displaying the abundance (or other quantity) of al...

Updated 5 hours ago by Abby Miller

Coherent sets of abiotic variables (N Sea biomarkers)

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

Save the workspace as Linnhe ws, close it and re-open the data on a suite of biomarkers (‘health’...

Updated 5 hours ago by Abby Miller

‘Mondrian’ shade plots, with sample and variable boundaries

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

A final possibility for this Loch Linnhe data is to display both horizontal and vertical division...

Updated 7 hours ago by Abby Miller

Line plots vs Shade plots

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

For this (reduced) Loch Linnhe data matrix, e.g. with the selection of 50 species made in Data1, ...

Updated 7 hours ago by Abby Miller

Running Type 3 SIMPROF

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

Type 3 SIMPROF can be run as a single test on the species set defined by the active matrix (which...

Updated 7 hours ago by Abby Miller

Running Type 2 SIMPROF

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

A Type 2 SIMPROF test is not part of a Wizards>Coherent plots run, and there is a good case for c...

Updated 8 hours ago by Abby Miller

Coherence plots wizard & Types 2/3 SIMPROF; (L. Linnhe macrofauna)

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

The third item on the Wizards menu is Coherence plots. This is a combination of SIMPROF runs with...

Updated 8 hours ago by Abby Miller

Other tree diagrams & SIMPROF (Bristol Ch. zooplankton)

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

For the final example of the options in shade plot, save and close Exe ws and return to the Brist...

Updated 8 hours ago by Abby Miller

Nearest neighbour ordering

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

The final option that Reorder offers, attempting to find a useful ordering on a 1-d axis of a non...

Updated 8 hours ago by Abby Miller

Ordering by a worksheet variable

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

The core task faced by the Special>Reorder operation is to reduce what is inevitably a high-d sim...

Updated 9 hours ago by Abby Miller

Clustering on species and samples (Exe nematodes)

PRIMER v7: User Manual / Tutorial 10. Wizards and species analyses (Basic...

The time-averaged Exe nematode community data were used extensively in Section 8 to illustrate nM...

Updated 9 hours ago by Abby Miller